2D Feature-Based Registration

Register images to a reference image based on feature-based methods

Parameters

imagestack

A stack of images (3D Arraylike)

detector

Method to detect and describe feature points in an image. Options: (‘Sift-Silx’, ‘Sift-SciKitImage’, ‘Orb-SciKitImage’)

matcher

Method to build correspondence between the feature points in two images. Options: (‘Descriptor-Silx’, ‘Descriptor-SciKitImage’)

mapper

Method to find parameters of the transformation to best satisfy the matches Options: (‘LstSq-Numpy’, ‘LstSq-SciPy’, ‘Ransac-SciKitImage’)

transformation_type

Type of transformation the mapper uses to satisfy the matches

inputs_are_stacks

If true: Will treat imagestack input of shape [B,N,H,W] as [B*N,H,W]

reference

The image in the stack that everything will be aligned to